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Post-Project Services

Mouse Colony Management Services

Since 1998, ingenious targeting laboratory has supported researchers with comprehensive colony management services, maintaining and expanding genetically engineered mouse lines for institutions worldwide. Our colony management expertise ensures your valuable mouse models are maintained with consistent genotyping, optimized breeding strategies, and professional animal husbandry.

Colony management services enable research programs to focus on experimental work while experts handle the logistics of maintaining breeding colonies, tracking genotypes, and expanding lines for experimental cohorts.

2,500+
Projects Completed
800+
Publications
26+
Years Experience
100%
Success Rate

Service Overview

Colony Maintenance

Ongoing colony maintenance keeps your mouse lines healthy and productive:

  • Breeding pair management:Maintain optimal breeding pairs for continuous production
  • Genotype tracking:Systematic genotyping and record keeping
  • Health monitoring:Regular health assessment and veterinary oversight
  • Census management:Track animal numbers, ages, and genotypes
  • Reporting:Regular updates on colony status and production

Breeding Expansion

Rapid expansion services generate experimental cohorts efficiently:

  • Cohort development:Breed to specific genotypes and numbers for experiments
  • Age matched cohorts:Coordinate breeding for age synchronized animals
  • Sex balanced groups:Generate appropriate male and female numbers
  • Schedule optimization:Strategic breeding to meet experimental deadlines
  • Large scale production:Scale colony for high throughput studies

Complex Breeding Schemes

Multi allele breeding requires careful genetic management:

  • Conditional knockout breeding:Floxed allele crossed to Cre driver
  • Multi allele combinations:Compound mutants with multiple modifications
  • Reporter crosses:Breeding for lineage tracing or expression analysis
  • Backcrossing programs:Systematic strain background purification
  • Intercross management:Generating homozygotes from heterozygote crosses

Genotyping Services

Routine Genotyping

Accurate genotyping is essential for colony management:

  • PCR based genotyping:Standard endpoint PCR for allele detection
  • Multiplex assays:Simultaneous detection of multiple alleles
  • Quantitative genotyping:Distinguish heterozygotes from homozygotes
  • Cre detection:Confirm presence of Cre transgene
  • Quality control:Validated assays with appropriate controls

Assay Development

For new alleles or complex genotypes, we develop and validate custom genotyping assays:

  • Primer design for targeted alleles
  • Assay optimization and validation
  • Positive and negative control establishment
  • Protocol documentation for technology transfer
Learn about Genotyping Services

Breeding Strategies

Conditional Knockout Breeding

CrossOffspringPurpose
Flox/+ × Cre/+Flox/+ Cre/+F1 compound heterozygotes
Flox/+ Cre/+ × Flox/FloxFlox/Flox Cre/+Experimental animals
Flox/Flox Cre-Flox/Flox Cre-Littermate controls

Backcrossing Programs

GenerationBackground PurityTime Required
N150%Contact us
N597%Contact us
N1099.9% (congenic)Contact us
Learn about Backcrossing Services

Facility and Health Status

SPF Health Status

Our facility maintains SPF (specific pathogen free) health status:

  • Regular sentinel testing for common mouse pathogens
  • Barrier housing with controlled access
  • HEPA filtered air handling
  • Autoclaved bedding and supplies
  • Health certification provided with shipments

Animal Care Standards

Professional animal husbandry ensures colony health:

  • AAALAC accredited or equivalent standards
  • Experienced animal care technicians
  • Veterinary oversight and consultation
  • Environmental enrichment
  • Detailed health and breeding records

Advantages of Professional Colony Management

Resource Efficiency

Outsourcing colony management provides institutional benefits:

  • Free vivarium space for active experiments
  • Reduce per diem costs for maintenance animals
  • Avoid capital investment in breeding infrastructure
  • Focus staff time on experimental work

Expertise and Consistency

Professional management provides:

  • Experienced breeding technicians
  • Optimized breeding strategies
  • Consistent genotyping quality
  • Detailed record keeping
  • Troubleshooting for difficult breeders

What Researchers Say

Our project manager did an outstanding job and has provided us with excellent customer service. Her availability to clarify issues has been nothing short of fantastic. I have recommended ingenious to others. Look forward for further collaboration on other projects.

Hamid M. Said, PhD, PharmD

University of California, Irvine

Discuss Your Colony Management Needs

Our team is ready to discuss colony management solutions for your research program. Whether you need ongoing maintenance of a single line or large scale cohort production across multiple genotypes, we can design a service package that meets your needs. Initial consultation is provided at no charge.

Frequently Asked Questions

Colony management includes breeding to maintain your mouse lines, genotyping to identify animals with desired alleles, health monitoring, cohort production for experiments, and reporting on colony status. Services can be customized based on your needs, from simple maintenance breeding to complex multi-allele cohort production.

Our facility uses strict barrier protocols including HEPA-filtered ventilated caging, autoclaved bedding and food, routine sentinel testing, and controlled access. All animals are tested for common murine pathogens. Rederivation services are available to clean up lines with compromised health status.

Yes. Conditional knockout breeding involves multiple crosses to combine floxed alleles with Cre drivers and generate experimental cohorts with proper controls. We design breeding schemes to minimize generations and maximize cohort yield, including littermate controls.

Lines can be transferred as live animals (with health certification) or as cryopreserved embryos or sperm. We coordinate with your institutional vivarium for shipping logistics. All incoming lines undergo quarantine and health testing before entering the main colony.

Lab Signals

Colony Management Insights

Subscribe to Lab Signals for expert guides on breeding strategies, colony optimization, and genotyping best practices from our PhD scientists.

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✦ New for 2026

Breeding Scheme Architect

Plan complex multi-allele breeding strategies, calculate expected genotype ratios, and estimate time to experimental cohorts—all before starting your project.

Visualize multi-generation breeding paths
Calculate Mendelian ratios automatically
Estimate timeline to study-ready cohorts

Free Research Tool

No account required

Allele 1Gene-flox (conditional)
Allele 2Cre-driver (tissue-specific)
TargetHomozygous knockout

→ 3 generations to target genotype