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Post-Project Services

Mouse Colony Management Services

Since 1998, ingenious targeting laboratory has supported researchers with ongoing colony maintenance, keeping genetically engineered mouse lines healthy and productive for institutions worldwide. Our colony management expertise ensures your valuable mouse models are maintained with consistent genotyping, optimized breeding strategies, and professional animal husbandry. Ongoing colony maintenance is part of our contract breeding services; if you need study ready animals bred to a defined genotype, age, and sex distribution, see mouse cohort development.

Colony management services enable research programs to focus on experimental work while experts handle the day to day logistics of maintaining breeding colonies, tracking genotypes, and keeping lines productive between studies.

2,800+
Models Generated
800+
Publications
26+
Years Experience
900+
Laboratories Served

Service Overview

Colony Maintenance

Ongoing colony maintenance keeps your mouse lines healthy and productive:

  • Breeding pair management:Maintain optimal breeding pairs for continuous production
  • Genotype tracking:Systematic genotyping and record keeping
  • Health monitoring:Regular health assessment and veterinary oversight
  • Census management:Track animal numbers, ages, and genotypes
  • Reporting:Regular updates on colony status and production

Breeding Expansion

Expansion breeding scales an existing colony toward experimental group sizes:

  • Genotype targeted breeding:Breed to specific genotypes and numbers for experiments
  • Age matched cohorts:Coordinate breeding for age synchronized animals
  • Sex balanced groups:Generate appropriate male and female numbers
  • Schedule optimization:Strategic breeding to meet experimental deadlines
  • Large scale production:Scale colony for high throughput studies
Explore Mouse Cohort Development

Complex Breeding Schemes

Multi allele breeding requires careful genetic management, including conditional knockout cohort breeding:

  • Conditional knockout breeding:Floxed allele crossed to Cre driver
  • Multi allele combinations:Compound mutants with multiple modifications
  • Reporter crosses:Breeding for lineage tracing or expression analysis
  • Backcrossing programs:Systematic strain background purification
  • Intercross management:Generating homozygotes from heterozygote crosses

Genotyping Services

Routine Genotyping

Accurate genotyping is essential for colony management:

  • PCR based genotyping:Standard endpoint PCR for allele detection
  • Multiplex assays:Simultaneous detection of multiple alleles
  • Quantitative genotyping:Distinguish heterozygotes from homozygotes
  • Cre detection:Confirm presence of Cre transgene
  • Quality control:Validated assays with appropriate controls

Assay Development

For new alleles or complex genotypes, we develop and validate generated genotyping assays:

  • Primer design for targeted alleles
  • Assay optimization and validation
  • Positive and negative control establishment
  • Protocol documentation for technology transfer
Learn about Genotyping Services

Breeding Strategies

Conditional Knockout Breeding

CrossOffspringPurpose
Flox/+ × Cre/+Flox/+ Cre/+F1 compound heterozygotes
Flox/+ Cre/+ × Flox/FloxFlox/Flox Cre/+Experimental animals
Flox/Flox Cre-Flox/Flox Cre-Littermate controls
Learn about Conditional Knockout Cohort Breeding

Backcrossing Programs

GenerationBackground PurityTime Required
N150%Contact us
N597%Contact us
N1099.9% (congenic)Contact us
Learn about Backcrossing Services

Facility and Health Status

SPF Health Status

Our facility maintains SPF (specific pathogen free) health status:

  • Regular sentinel testing for common mouse pathogens
  • Barrier housing with controlled access
  • HEPA filtered air handling
  • Autoclaved bedding and supplies
  • Health certification provided with shipments

Animal Care Standards

Professional animal husbandry ensures colony health:

  • AAALAC accredited or equivalent standards
  • Experienced animal care technicians
  • Veterinary oversight and consultation
  • Environmental enrichment
  • Detailed health and breeding records

Advantages of Professional Colony Management

Resource Efficiency

Outsourcing colony management provides institutional benefits:

  • Free vivarium space for active experiments
  • Reduce per diem costs for maintenance animals
  • Avoid capital investment in breeding infrastructure
  • Focus staff time on experimental work

Expertise and Consistency

Professional management provides:

  • Experienced breeding technicians
  • Optimized breeding strategies
  • Consistent genotyping quality
  • Detailed record keeping
  • Troubleshooting for difficult breeders

What Researchers Say

Our project manager did an outstanding job and has provided us with excellent customer service. Her availability to clarify issues has been nothing short of fantastic. I have recommended ingenious to others. Look forward for further collaboration on other projects.

Hamid M. Said, PhD, PharmD

University of California, Irvine

Frequently Asked Questions

✦ New for 2026

Breeding Scheme Architect

Plan your single allele breeding strategy, calculate expected genotype ratios, and estimate time to experimental cohorts, all before starting your project.

Visualize breeding paths
Calculate Mendelian ratios automatically
Estimate timeline to study ready cohorts

Free Research Tool

No account required

AlleleGene-flox (conditional)
Starting genotypeHeterozygous
TargetHomozygous knockout

→ 3 generations to target genotype

Lab Signals

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Colony Management Insights

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